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SourceForge net bowtie2 version 2.2.5
Bowtie2 Version 2.2.5, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bowtie2+version+2%2E2%2E5/bowtie2/pmc11708518-86-9-12
Average 90 stars, based on 1 article reviews
bowtie2 version 2.2.5 - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Thermal tolerance and cellular plasticity in marine phytoplankton diatoms modulated by epigenetic mechanisms for environmental adaptation
Article Snippet: 543 Data processing and analysis 544 Paired-end reads were aligned using Bowtie2 version 2.2.5 (https://bowtie-545 bio.sourceforge.net/bowtie2/index.shtml).

Article Title: The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner
Article Snippet: Aligned using Bowtie2 version 2.2.5 ( https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.5/ ) with options:–local–very-sensitive-local–nounal–no-mixed–no-discordant–phred33 -I 10 -X 700; mapping was performed using the hg38 or mm10 build of the human and mouse genome respectively, merged with viral genome sequence (gAAV).

Article Title: Deep Sequencing of H7N9 Influenza A Viruses from 16 Infected Patients from 2013 to 2015 in Shanghai Reveals Genetic Diversity and Antigenic Drift
Article Snippet: Reads were mapped to Bowtie2 (version 2.2.5; http://bowtie-bio.sourceforge.net/bowtie2/index .shtml) indexed to the consensus sequence of all H7N9 human strains in China in the 2013 genome using Tophat2 (release 2.0.13; http://ccb.jhu.edu/software/tophat/index.shtml) downloaded from the Center for Computational Biology, Johns Hopkins University (http://ccb.jhu.edu/) (84).

Article Title: Maternal nutrition and offspring lung health: sex-specific pathway modulation in fibrosis, metabolism, and immunity
Article Snippet: Clean reads were mapped to the reference genome using Bowtie2 (version 2.2.5, https://sourceforge.net/projects/bowtiebio ) and HISAT2 (version 2.0.4, http://www.ccb.jhu.edu/software/hisat/index.shtml ).

Article Title: Efficient low-cost chromatin profiling with CUT&Tag
Article Snippet: 52) Align paired-end reads using Bowtie2 version 2.2.5 ( http://bowtie-bio.sourceforge.net/bowtie2/index.shtmL ) with options: --end-to-end --very-sensitive --no-unal --no-mixed --no-discordant --phred33 -I 10 -X 700.

Article Title: Efficient low-cost chromatin profiling with CUT&Tag
Article Snippet: Data processing and analysis ● Timing 1 d (variable) 52 Align paired-end reads using Bowtie2 version 2.2.5 (http://bowtie-bio.sourceforge.net/bowtie2/ index.shtml) with options: --end-to-end --very-sensitive --no-unal --no-mixed --no-discordant --phred33 -I 10 -X 700.

Article Title: The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner.
Article Snippet: Aligned using Bowtie2 version 2.2.5 (https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.5/) with options:–local–very-sensitive-local–nounal–no-mixed–no-discordant– phred33 -I 10 -X 700;mappingwas performed using the hg38 ormm10 build of the human andmouse genome respectively, merged with viral genome sequence (gAAV).

Article Title: Dual Plasmepsin-Targeting Antimalarial Agents Disrupt Multiple Stages of the Malaria Parasite Life Cycle
Article Snippet: Bowtie2 (version 2.2.5)[REMOVED HYPERLINK FIELD] , , https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.5/.



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